Code from: Influence of Environmental Conditions at Spawning Sites and Migration Routes on Adaptive Variation and Population Connectivity in Chinook Salmon

Other Authors
Travis Seaborn (206) Shawn Narum (142) Lisette Waits (162)
Yara Alshwairikh Rebekah Horn William Swain Steve Stephens-Cardenas Jenny Olsson Shayla Kroeze
GEM3 Authors
Travis Seaborn
Shawn Narum
Lisette Waits
Description/Abstract

This repository contains all the scripts used to run GEA analyses, Neighbor-joining analysis, and create environmental datasets in Alshwairikh et al. 2021

Environmental data matrix and allele frequency amtrix are available on Dryad: https://doi.org/10.5061/dryad.prr4xgxmn

Discipline/Subject
Earth and related Environmental sciences
Biological sciences
GEM3 Component
Mechanisms
GEM3 Keywords
bioinformatics
genomics
wildlife
Other Keywords
- Chinook salmon (Oncorhynchus tshawytscha)
- genome–environment associations (GEA)
- SNP
External Affiliate(s)
Columbia River Inter-Tribal Fish Commission (CRITFC)-Hagerman Genetics Laboratory
Make available to
the public
Approved for public viewing
Yes
Data Available
WF submission id
332
Year Reported
Yr 4 (2021-22)