Annotations from: Artemisia tridentata subsp. tridentata drought GxE experiment transcriptomics data-BioProject PRJNA934360
Submission information
Submission Number: 159
Created: Fri, 02/17/2023 - 15:28
Annotations from: Artemisia tridentata subsp. tridentata drought GxE experiment transcriptomics data-BioProject PRJNA934360
The data set contains the transcript annotations for the assembled IDT3 transcriptome. The trinotate annotation file provides an assembled transcript ID, gene name, how the gene was identified (the trinotate pipeline contains several methods of gene identification), and gene ontology information. The accompanying BAM alignment files contain the read mapping data for transcriptome samples used in the differential gene expression experiment. Raw read, BAM alignment and assembled IDT3 transcriptome data files are available from the NCBI SRA database as part of BioProject PRJNA934360.
GEM3 Project Affiliation(s)
Internal Affiliation(s)
Boise State University, University of Idaho
Mechanisms
Project Keywords
Artemisia tridentata (sagebrush), bioinformatics, ecology, gene/genome/genotype-environment interaction (GxE), genomics
- RNASeq
- annotations
- transcriptome
Data Authors/Creators
Authors/Creators
- Other Author(s): Kara Moran
- Other Author(s): Erin Milliken
- Other Author(s): Walker Morales
- Other Author(s): Marcelo Serpe
Contact Information
Dataset Contact Information
Sven Buerki
Geographic Research Space
This project involves a research component conducted at field site(s) or collecting data from a target population within a specific geographic area, This project involves a laboratory research component conducted within research facilities
- Buerki Lab, Boise State University
- Center for Genome Research and Biocomputing Laboratory, Oregon State University
- HudsonAlpha Genomics Institute
Geographic Information
Sagebrush steppe ecosystems in Idaho and Utah USA
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Temporal Information
2019-07-10
2022-12-31
Metadata Files
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Data Files
- English
DOI Details
10.7923/h898-2606
Data Licensing & Availability
CC0 | No Rights Reserved
2023-02-17
Funding Information
NSF Idaho EPSCoR Program: Award OIA‐1757324, Towards a genomic model to predict drought tolerance in sagebrush: Preventing embolism as a key adaptation
- Dovetail Genomics-Tree of Life Award